Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 AC116407.3-201ENST00000623905 1129 ntBASIC21.31■■□□□ 1
DDX4Q9NQI0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 KRT8P47-201ENST00000604727 1398 ntBASIC21.31■■□□□ 1
DDX4Q9NQI0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
DDX4Q9NQI0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.31■■□□□ 1
DDX4Q9NQI0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.31■■□□□ 1
DDX4Q9NQI0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
DDX4Q9NQI0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.3■■□□□ 1
DDX4Q9NQI0 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
DDX4Q9NQI0 AC073592.3-201ENST00000625118 1834 ntBASIC21.3■■□□□ 1
DDX4Q9NQI0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 RPS2P1-201ENST00000434010 821 ntBASIC21.3■■□□□ 1
DDX4Q9NQI0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.3■■□□□ 1
DDX4Q9NQI0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 AC025062.2-201ENST00000605477 670 ntBASIC21.3■■□□□ 1
DDX4Q9NQI0 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.3■■□□□ 1
DDX4Q9NQI0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.3■■□□□ 1
DDX4Q9NQI0 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.3■■□□□ 1
DDX4Q9NQI0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.3■■□□□ 1
DDX4Q9NQI0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 AP000974.1-201ENST00000623909 2387 ntBASIC21.3■■□□□ 1
DDX4Q9NQI0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.3■■□□□ 1
DDX4Q9NQI0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.29■■□□□ 1
DDX4Q9NQI0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 AC010460.3-201ENST00000511359 1579 ntBASIC21.29■■□□□ 1
DDX4Q9NQI0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
DDX4Q9NQI0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.29■■□□□ 1
DDX4Q9NQI0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 PMS2P1-201ENST00000431037 1228 ntBASIC21.29■■□□□ 1
DDX4Q9NQI0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 AC012640.2-201ENST00000561606 901 ntBASIC21.29■■□□□ 1
DDX4Q9NQI0 AC106730.1-201ENST00000566722 1090 ntBASIC21.29■■□□□ 1
DDX4Q9NQI0 AC006538.3-201ENST00000612495 578 ntBASIC21.29■■□□□ 1
DDX4Q9NQI0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
DDX4Q9NQI0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DDX4Q9NQI0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.29■■□□□ 1
DDX4Q9NQI0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.28■■□□□ 1
DDX4Q9NQI0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.28■■□□□ 1
DDX4Q9NQI0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 AL356309.3-201ENST00000624132 1934 ntBASIC21.28■■□□□ 1
DDX4Q9NQI0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.28■■□□□ 1
DDX4Q9NQI0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.28■■□□□ 1
DDX4Q9NQI0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.28■■□□□ 1
DDX4Q9NQI0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.28■■□□□ 1
DDX4Q9NQI0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.28■■□□□ 1
DDX4Q9NQI0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 AP000867.4-201ENST00000641616 219 ntBASIC21.28■■□□□ 1
DDX4Q9NQI0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.28■■□□□ 1
DDX4Q9NQI0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
DDX4Q9NQI0 AC097374.2-201ENST00000618617 1306 ntBASIC21.28■■□□□ 1
DDX4Q9NQI0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.28■■□□□ 1
DDX4Q9NQI0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
DDX4Q9NQI0 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX4Q9NQI0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms