Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
MMP28Q9H239 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.02■□□□□ 0.16
MMP28Q9H239 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.02■□□□□ 0.16
MMP28Q9H239 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
MMP28Q9H239 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
MMP28Q9H239 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 PRKY-204ENST00000533551 1019 ntBASIC16.02■□□□□ 0.16
MMP28Q9H239 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.02■□□□□ 0.16
MMP28Q9H239 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.02■□□□□ 0.16
MMP28Q9H239 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.02■□□□□ 0.16
MMP28Q9H239 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MMP28Q9H239 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
MMP28Q9H239 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
MMP28Q9H239 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.02■□□□□ 0.16
MMP28Q9H239 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.02■□□□□ 0.15
MMP28Q9H239 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MMP28Q9H239 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.01■□□□□ 0.15
MMP28Q9H239 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 AC068418.2-201ENST00000577309 3703 ntBASIC16.01■□□□□ 0.15
MMP28Q9H239 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 AP006587.1-201ENST00000534129 1502 ntBASIC16.01■□□□□ 0.15
MMP28Q9H239 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.01■□□□□ 0.15
MMP28Q9H239 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
MMP28Q9H239 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 AC069544.1-201ENST00000609399 999 ntBASIC16.01■□□□□ 0.15
MMP28Q9H239 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
MMP28Q9H239 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
MMP28Q9H239 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MMP28Q9H239 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 AL121761.2-201ENST00000598007 1648 ntBASIC16.01■□□□□ 0.15
MMP28Q9H239 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.01■□□□□ 0.15
MMP28Q9H239 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16■□□□□ 0.15
MMP28Q9H239 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16■□□□□ 0.15
MMP28Q9H239 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16■□□□□ 0.15
MMP28Q9H239 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16■□□□□ 0.15
MMP28Q9H239 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
MMP28Q9H239 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16■□□□□ 0.15
MMP28Q9H239 AC073648.6-201ENST00000641589 218 ntBASIC16■□□□□ 0.15
MMP28Q9H239 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MMP28Q9H239 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
MMP28Q9H239 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms