Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TIMP4Q99727 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TIMP4Q99727 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.62■□□□□ 0.25
TIMP4Q99727 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TIMP4Q99727 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TIMP4Q99727 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.61■□□□□ 0.25
TIMP4Q99727 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 KRT8P50-201ENST00000562022 1438 ntBASIC16.61■□□□□ 0.25
TIMP4Q99727 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TIMP4Q99727 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.61■□□□□ 0.25
TIMP4Q99727 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.6■□□□□ 0.25
TIMP4Q99727 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.6■□□□□ 0.25
TIMP4Q99727 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.6■□□□□ 0.25
TIMP4Q99727 ATP5G2P1-201ENST00000433580 426 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 HCG4P8-203ENST00000443049 980 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 BX276092.5-203ENST00000456199 560 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.6■□□□□ 0.25
TIMP4Q99727 KRT18P41-201ENST00000518924 1277 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.6■□□□□ 0.25
TIMP4Q99727 AC009065.1-201ENST00000564055 1225 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.6■□□□□ 0.25
TIMP4Q99727 AL121672.3-201ENST00000608644 468 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TIMP4Q99727 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.6■□□□□ 0.25
TIMP4Q99727 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TIMP4Q99727 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TIMP4Q99727 AC134043.2-201ENST00000624206 2238 ntBASIC16.6■□□□□ 0.25
TIMP4Q99727 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TIMP4Q99727 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.59■□□□□ 0.25
TIMP4Q99727 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.59■□□□□ 0.25
TIMP4Q99727 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.59■□□□□ 0.25
TIMP4Q99727 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TIMP4Q99727 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 AP000593.1-201ENST00000393668 712 ntBASIC16.59■□□□□ 0.25
TIMP4Q99727 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.59■□□□□ 0.25
TIMP4Q99727 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TIMP4Q99727 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.59■□□□□ 0.25
TIMP4Q99727 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TIMP4Q99727 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.59■□□□□ 0.25
TIMP4Q99727 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TIMP4Q99727 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.59■□□□□ 0.25
TIMP4Q99727 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.59■□□□□ 0.25
TIMP4Q99727 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.59■□□□□ 0.25
TIMP4Q99727 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms