Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NR1H4Q96RI1 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.08■□□□□ 0.32
NR1H4Q96RI1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 FLJ16779-201ENST00000612722 7638 ntBASIC17.07■□□□□ 0.32
NR1H4Q96RI1 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NR1H4Q96RI1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 MCRIP2P1-201ENST00000394346 511 ntBASIC17.06■□□□□ 0.32
NR1H4Q96RI1 AC016769.1-201ENST00000409132 1010 ntBASIC17.06■□□□□ 0.32
NR1H4Q96RI1 MIR6821-201ENST00000617625 74 ntBASIC17.06■□□□□ 0.32
NR1H4Q96RI1 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
NR1H4Q96RI1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms