Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC009102.3-201ENST00000623118 1491 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC004870.1-201ENST00000315132 882 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC091304.2-201ENST00000564639 760 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 Z69720.1-201ENST00000601483 472 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC004263.2-201ENST00000617183 678 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.02■□□□□ 0.96
TRERF1Q96PN7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRERF1Q96PN7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRERF1Q96PN7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.02■□□□□ 0.95
TRERF1Q96PN7 MYLKP1-201ENST00000509077 1580 ntBASIC21.02■□□□□ 0.95
TRERF1Q96PN7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRERF1Q96PN7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 KRT17P6-201ENST00000453795 1220 ntBASIC21■□□□□ 0.95
TRERF1Q96PN7 KRT18P31-201ENST00000506277 1292 ntBASIC21■□□□□ 0.95
TRERF1Q96PN7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21■□□□□ 0.95
TRERF1Q96PN7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 AC112777.1-201ENST00000540175 1423 ntBASIC21■□□□□ 0.95
TRERF1Q96PN7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21■□□□□ 0.95
TRERF1Q96PN7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
TRERF1Q96PN7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21■□□□□ 0.95
TRERF1Q96PN7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRERF1Q96PN7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 AC093503.3-201ENST00000624917 2352 ntBASIC20.99■□□□□ 0.95
TRERF1Q96PN7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRERF1Q96PN7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms