Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PTCHD1Q96NR3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 KRT8P26-201ENST00000534154 1276 ntBASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD1Q96NR3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PTCHD1Q96NR3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 AL390719.2-201ENST00000606993 987 ntBASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD1Q96NR3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 AL353692.3-201ENST00000407031 1396 ntBASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 AC004263.2-201ENST00000617183 678 ntBASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD1Q96NR3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 AC016734.2-201ENST00000624325 1377 ntBASIC17.06■□□□□ 0.32
PTCHD1Q96NR3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms