Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 ABALON-201ENST00000629058 1903 ntBASIC17.38■□□□□ 0.37
VMP1Q96GC9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 HEIH-201ENST00000623091 1652 ntBASIC17.37■□□□□ 0.37
VMP1Q96GC9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.37■□□□□ 0.37
VMP1Q96GC9 HOMER2P1-201ENST00000455653 964 ntBASIC17.37■□□□□ 0.37
VMP1Q96GC9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 AL441883.1-201ENST00000566170 1045 ntBASIC17.37■□□□□ 0.37
VMP1Q96GC9 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 SIRPAP1-201ENST00000448467 1770 ntBASIC17.37■□□□□ 0.37
VMP1Q96GC9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VMP1Q96GC9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VMP1Q96GC9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 MIR564-202ENST00000385049 94 ntBASIC17.36■□□□□ 0.37
VMP1Q96GC9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 AC083906.6-201ENST00000641366 219 ntBASIC17.36■□□□□ 0.37
VMP1Q96GC9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VMP1Q96GC9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.36■□□□□ 0.37
VMP1Q96GC9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VMP1Q96GC9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.35■□□□□ 0.37
VMP1Q96GC9 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms