Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SNRNP40Q96DI7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 RNA5SP416-201ENST00000516838 111 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 UNC93B6-202ENST00000528242 690 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AC107918.4-202ENST00000641623 219 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AC007952.6-201ENST00000573168 2673 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AC003957.1-201ENST00000625108 2673 ntBASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SNRNP40Q96DI7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 AP002414.3-201ENST00000589352 1468 ntBASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 KRT18P65-201ENST00000439811 1286 ntBASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 AC027796.2-201ENST00000575326 344 ntBASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SNRNP40Q96DI7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 AC093484.2-201ENST00000580996 2166 ntBASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 AC007967.2-201ENST00000432613 625 ntBASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 AC004967.1-201ENST00000453589 447 ntBASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.23■□□□□ 0.19
SNRNP40Q96DI7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms