Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PHGDH-209ENST00000641074 1780 ntBASIC23.58■■□□□ 1.37
RTF1Q92541 AC132938.6-201ENST00000623828 1655 ntBASIC23.58■■□□□ 1.37
RTF1Q92541 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
RTF1Q92541 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
RTF1Q92541 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC23.58■■□□□ 1.37
RTF1Q92541 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
RTF1Q92541 AC112698.1-201ENST00000510299 916 ntBASIC23.58■■□□□ 1.37
RTF1Q92541 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.58■■□□□ 1.37
RTF1Q92541 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.58■■□□□ 1.37
RTF1Q92541 AL591684.3-201ENST00000605187 298 ntBASIC23.58■■□□□ 1.37
RTF1Q92541 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC23.58■■□□□ 1.37
RTF1Q92541 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
RTF1Q92541 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RTF1Q92541 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
RTF1Q92541 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
RTF1Q92541 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
RTF1Q92541 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC23.58■■□□□ 1.36
RTF1Q92541 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
RTF1Q92541 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC23.57■■□□□ 1.36
RTF1Q92541 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 CCS-201ENST00000310190 942 ntTSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC23.57■■□□□ 1.36
RTF1Q92541 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.57■■□□□ 1.36
RTF1Q92541 MIR5100-201ENST00000579544 119 ntBASIC23.57■■□□□ 1.36
RTF1Q92541 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 AC114341.1-201ENST00000618070 349 ntBASIC23.57■■□□□ 1.36
RTF1Q92541 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RTF1Q92541 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.57■■□□□ 1.36
RTF1Q92541 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 TP73-AS1-210ENST00000637775 1455 ntBASIC23.56■■□□□ 1.36
RTF1Q92541 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.56■■□□□ 1.36
RTF1Q92541 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC23.56■■□□□ 1.36
RTF1Q92541 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.56■■□□□ 1.36
RTF1Q92541 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.56■■□□□ 1.36
RTF1Q92541 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
RTF1Q92541 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.56■■□□□ 1.36
RTF1Q92541 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
RTF1Q92541 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RTF1Q92541 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
RTF1Q92541 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 AC087289.5-201ENST00000586076 3175 ntBASIC23.55■■□□□ 1.36
RTF1Q92541 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 THAP5-204ENST00000438865 868 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 AC009533.2-201ENST00000543664 586 ntBASIC23.55■■□□□ 1.36
RTF1Q92541 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 AL138831.2-201ENST00000606564 490 ntBASIC23.55■■□□□ 1.36
RTF1Q92541 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.55■■□□□ 1.36
RTF1Q92541 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.55■■□□□ 1.36
RTF1Q92541 AL031008.1-201ENST00000619963 541 ntBASIC23.55■■□□□ 1.36
RTF1Q92541 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.55■■□□□ 1.36
RTF1Q92541 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
RTF1Q92541 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
RTF1Q92541 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RTF1Q92541 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
RTF1Q92541 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23.54■■□□□ 1.36
RTF1Q92541 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC23.54■■□□□ 1.36
RTF1Q92541 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
RTF1Q92541 AC125634.1-201ENST00000438758 1403 ntBASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms