Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HLA-G-202ENST00000376815 851 ntBASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HLA-G-203ENST00000376818 1127 ntBASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 RALB-208ENST00000631312 311 ntTSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.47□□□□□ -0.09
CLRN3Q8NCR9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 AC135279.3-201ENST00000610945 1311 ntBASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 AL136162.1-201ENST00000607711 1078 ntBASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 AC006449.5-201ENST00000610658 2098 ntBASIC14.46□□□□□ -0.09
CLRN3Q8NCR9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLRN3Q8NCR9 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 AC144831.1-201ENST00000573312 2656 ntBASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms