Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIM2P55344 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
LIM2P55344 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.21■□□□□ 0.34
LIM2P55344 AL096828.2-201ENST00000567259 1965 ntBASIC17.2■□□□□ 0.34
LIM2P55344 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 KRT89P-201ENST00000620027 1478 ntBASIC17.2■□□□□ 0.34
LIM2P55344 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LIM2P55344 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LIM2P55344 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.2■□□□□ 0.34
LIM2P55344 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.2■□□□□ 0.34
LIM2P55344 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.2■□□□□ 0.34
LIM2P55344 KRT18P48-201ENST00000434763 852 ntBASIC17.2■□□□□ 0.34
LIM2P55344 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.2■□□□□ 0.34
LIM2P55344 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.2■□□□□ 0.34
LIM2P55344 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.2■□□□□ 0.34
LIM2P55344 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.2■□□□□ 0.34
LIM2P55344 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.2■□□□□ 0.34
LIM2P55344 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.2■□□□□ 0.34
LIM2P55344 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.2■□□□□ 0.34
LIM2P55344 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LIM2P55344 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.2■□□□□ 0.34
LIM2P55344 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIM2P55344 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.19■□□□□ 0.34
LIM2P55344 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.19■□□□□ 0.34
LIM2P55344 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.19■□□□□ 0.34
LIM2P55344 AC087388.1-201ENST00000571370 1112 ntBASIC17.19■□□□□ 0.34
LIM2P55344 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
LIM2P55344 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.19■□□□□ 0.34
LIM2P55344 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.19■□□□□ 0.34
LIM2P55344 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LIM2P55344 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIM2P55344 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.19■□□□□ 0.34
LIM2P55344 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 AP000997.3-201ENST00000623333 2250 ntBASIC17.18■□□□□ 0.34
LIM2P55344 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.18■□□□□ 0.34
LIM2P55344 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.18■□□□□ 0.34
LIM2P55344 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.18■□□□□ 0.34
LIM2P55344 KRT18P35-201ENST00000510488 1269 ntBASIC17.18■□□□□ 0.34
LIM2P55344 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.18■□□□□ 0.34
LIM2P55344 AL121956.5-201ENST00000625261 221 ntBASIC17.18■□□□□ 0.34
LIM2P55344 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LIM2P55344 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIM2P55344 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIM2P55344 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LIM2P55344 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms