Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.84■□□□□ 0.61
PTPN9P43378 AL031133.1-201ENST00000406807 723 ntBASIC18.84■□□□□ 0.61
PTPN9P43378 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 AL136038.3-201ENST00000561909 1096 ntBASIC18.84■□□□□ 0.61
PTPN9P43378 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.84■□□□□ 0.61
PTPN9P43378 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN9P43378 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
PTPN9P43378 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN9P43378 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.83■□□□□ 0.61
PTPN9P43378 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.83■□□□□ 0.61
PTPN9P43378 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.83■□□□□ 0.61
PTPN9P43378 AC022898.2-201ENST00000616822 1312 ntBASIC18.83■□□□□ 0.61
PTPN9P43378 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
PTPN9P43378 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTPN9P43378 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 AL645929.1-201ENST00000420084 975 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.83■□□□□ 0.6
PTPN9P43378 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.83■□□□□ 0.6
PTPN9P43378 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.83■□□□□ 0.6
PTPN9P43378 RNF126P1-202ENST00000569893 925 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 AC005332.3-201ENST00000589904 676 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 NTF6B-201ENST00000591913 560 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 AL390719.2-201ENST00000606993 987 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 AL590326.2-201ENST00000625139 305 ntBASIC18.83■□□□□ 0.6
PTPN9P43378 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
PTPN9P43378 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PTPN9P43378 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PTPN9P43378 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PTPN9P43378 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTPN9P43378 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 AL353692.3-201ENST00000407031 1396 ntBASIC18.82■□□□□ 0.6
PTPN9P43378 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PTPN9P43378 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.82■□□□□ 0.6
PTPN9P43378 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.82■□□□□ 0.6
PTPN9P43378 AC009154.2-201ENST00000621177 724 ntBASIC18.82■□□□□ 0.6
PTPN9P43378 AL121956.5-201ENST00000625261 221 ntBASIC18.82■□□□□ 0.6
PTPN9P43378 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.82■□□□□ 0.6
PTPN9P43378 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PTPN9P43378 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTPN9P43378 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN9P43378 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.81■□□□□ 0.6
PTPN9P43378 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN9P43378 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN9P43378 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN9P43378 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.81■□□□□ 0.6
PTPN9P43378 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.81■□□□□ 0.6
PTPN9P43378 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTPN9P43378 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms