Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC30.2■■■□□ 2.42
CUX1P39880 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CUX1P39880 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC30.19■■■□□ 2.42
CUX1P39880 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
CUX1P39880 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
CUX1P39880 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 IGLL3P-201ENST00000412472 434 ntBASIC30.19■■■□□ 2.42
CUX1P39880 HCG4B-203ENST00000450128 991 ntBASIC30.19■■■□□ 2.42
CUX1P39880 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC30.19■■■□□ 2.42
CUX1P39880 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC30.19■■■□□ 2.42
CUX1P39880 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC30.19■■■□□ 2.42
CUX1P39880 AL596442.2-201ENST00000610240 980 ntBASIC30.19■■■□□ 2.42
CUX1P39880 AC004706.3-202ENST00000621574 984 ntBASIC30.19■■■□□ 2.42
CUX1P39880 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CUX1P39880 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC30.19■■■□□ 2.42
CUX1P39880 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC30.18■■■□□ 2.42
CUX1P39880 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
CUX1P39880 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 CFL1-202ENST00000524553 860 ntTSL 2 BASIC30.18■■■□□ 2.42
CUX1P39880 MIR4469-201ENST00000583919 79 ntBASIC30.18■■■□□ 2.42
CUX1P39880 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
CUX1P39880 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CUX1P39880 KRT18P28-201ENST00000453838 1332 ntBASIC30.18■■■□□ 2.42
CUX1P39880 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC30.18■■■□□ 2.42
CUX1P39880 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC30.18■■■□□ 2.42
CUX1P39880 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CUX1P39880 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC30.17■■■□□ 2.42
CUX1P39880 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CUX1P39880 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
CUX1P39880 AC254562.1-201ENST00000417586 456 ntBASIC30.17■■■□□ 2.42
CUX1P39880 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC30.17■■■□□ 2.42
CUX1P39880 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CUX1P39880 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 AL353593.2-201ENST00000602529 1483 ntBASIC30.17■■■□□ 2.42
CUX1P39880 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC30.17■■■□□ 2.42
CUX1P39880 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CUX1P39880 AC093010.1-201ENST00000473625 1624 ntBASIC30.17■■■□□ 2.42
CUX1P39880 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC30.17■■■□□ 2.42
CUX1P39880 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC30.17■■■□□ 2.42
CUX1P39880 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 TCAP-202ENST00000578283 583 ntTSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC30.17■■■□□ 2.42
CUX1P39880 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC30.17■■■□□ 2.42
CUX1P39880 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CUX1P39880 AC005332.7-201ENST00000614046 2005 ntBASIC30.16■■■□□ 2.42
CUX1P39880 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC30.16■■■□□ 2.42
CUX1P39880 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CUX1P39880 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
CUX1P39880 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CUX1P39880 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC30.16■■■□□ 2.42
CUX1P39880 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC30.16■■■□□ 2.42
CUX1P39880 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC30.16■■■□□ 2.42
CUX1P39880 AL589182.2-201ENST00000619332 1049 ntBASIC30.16■■■□□ 2.42
CUX1P39880 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC30.16■■■□□ 2.42
CUX1P39880 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC30.15■■■□□ 2.42
CUX1P39880 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC30.15■■■□□ 2.42
CUX1P39880 AL078644.1-201ENST00000609881 752 ntBASIC30.15■■■□□ 2.42
CUX1P39880 AC073592.5-201ENST00000624854 528 ntBASIC30.15■■■□□ 2.42
CUX1P39880 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CUX1P39880 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CUX1P39880 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CUX1P39880 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
CUX1P39880 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC30.14■■■□□ 2.42
CUX1P39880 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CUX1P39880 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CUX1P39880 ARTN-206ENST00000472435 402 ntTSL 3 BASIC30.14■■■□□ 2.42
CUX1P39880 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
CUX1P39880 AC005829.1-201ENST00000570002 483 ntBASIC30.14■■■□□ 2.42
CUX1P39880 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC30.14■■■□□ 2.42
CUX1P39880 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC30.14■■■□□ 2.42
CUX1P39880 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC30.14■■■□□ 2.42
CUX1P39880 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CUX1P39880 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC30.13■■■□□ 2.41
CUX1P39880 PTGES2-AS1-201ENST00000443493 2100 ntBASIC30.13■■■□□ 2.41
CUX1P39880 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC30.13■■■□□ 2.41
CUX1P39880 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC30.13■■■□□ 2.41
CUX1P39880 RIN3-211ENST00000557762 517 ntTSL 3 BASIC30.13■■■□□ 2.41
CUX1P39880 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CUX1P39880 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC30.13■■■□□ 2.41
CUX1P39880 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
CUX1P39880 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms