Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
COL5A3P25940 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL5A3P25940 CD9-202ENST00000382515 1229 ntTSL 5 BASIC22.71■■□□□ 1.23
COL5A3P25940 PRYP5-201ENST00000451909 266 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 ARTN-206ENST00000472435 402 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 AC092865.6-201ENST00000642101 219 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 AC006504.4-201ENST00000592118 1568 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC22.71■■□□□ 1.23
COL5A3P25940 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
COL5A3P25940 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.71■■□□□ 1.23
COL5A3P25940 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
COL5A3P25940 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
COL5A3P25940 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL5A3P25940 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.71■■□□□ 1.23
COL5A3P25940 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 HCG4B-203ENST00000450128 991 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC22.71■■□□□ 1.23
COL5A3P25940 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.71■■□□□ 1.23
COL5A3P25940 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.71■■□□□ 1.23
COL5A3P25940 AL513190.1-201ENST00000621254 727 ntBASIC22.71■■□□□ 1.23
COL5A3P25940 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC22.71■■□□□ 1.23
COL5A3P25940 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC22.7■■□□□ 1.22
COL5A3P25940 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.7■■□□□ 1.22
COL5A3P25940 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC22.7■■□□□ 1.22
COL5A3P25940 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC22.7■■□□□ 1.22
COL5A3P25940 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.7■■□□□ 1.22
COL5A3P25940 CYMP-203ENST00000474680 1263 ntBASIC22.7■■□□□ 1.22
COL5A3P25940 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC22.7■■□□□ 1.22
COL5A3P25940 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.7■■□□□ 1.22
COL5A3P25940 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC22.7■■□□□ 1.22
COL5A3P25940 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC22.7■■□□□ 1.22
COL5A3P25940 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC22.7■■□□□ 1.22
COL5A3P25940 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
COL5A3P25940 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.7■■□□□ 1.22
COL5A3P25940 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL5A3P25940 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
COL5A3P25940 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.69■■□□□ 1.22
COL5A3P25940 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.69■■□□□ 1.22
COL5A3P25940 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC22.69■■□□□ 1.22
COL5A3P25940 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC22.69■■□□□ 1.22
COL5A3P25940 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC22.69■■□□□ 1.22
COL5A3P25940 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.69■■□□□ 1.22
COL5A3P25940 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.69■■□□□ 1.22
COL5A3P25940 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC22.69■■□□□ 1.22
COL5A3P25940 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
COL5A3P25940 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.69■■□□□ 1.22
COL5A3P25940 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL5A3P25940 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
COL5A3P25940 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL5A3P25940 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
COL5A3P25940 COX5A-202ENST00000562233 441 ntTSL 3 BASIC22.68■■□□□ 1.22
COL5A3P25940 AC005593.1-201ENST00000624894 515 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC22.68■■□□□ 1.22
COL5A3P25940 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL5A3P25940 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC22.68■■□□□ 1.22
COL5A3P25940 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC22.68■■□□□ 1.22
COL5A3P25940 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL5A3P25940 CRYGEP-201ENST00000412192 528 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 LINC02084-201ENST00000606069 1096 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 AC010654.1-201ENST00000615722 808 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC22.68■■□□□ 1.22
COL5A3P25940 AL589182.2-201ENST00000619332 1049 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 AC073592.5-201ENST00000624854 528 ntBASIC22.68■■□□□ 1.22
COL5A3P25940 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL5A3P25940 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
COL5A3P25940 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL5A3P25940 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
COL5A3P25940 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL5A3P25940 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL5A3P25940 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.67■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms