Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL390955.2-201ENST00000603032 514 ntBASIC18.58■□□□□ 0.56
COL9A1P20849 AC092902.6-201ENST00000641783 218 ntBASIC18.58■□□□□ 0.56
COL9A1P20849 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.58■□□□□ 0.56
COL9A1P20849 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.58■□□□□ 0.56
COL9A1P20849 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL9A1P20849 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
COL9A1P20849 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.57■□□□□ 0.56
COL9A1P20849 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.57■□□□□ 0.56
COL9A1P20849 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.57■□□□□ 0.56
COL9A1P20849 AL353692.3-201ENST00000407031 1396 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
COL9A1P20849 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.57■□□□□ 0.56
COL9A1P20849 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL9A1P20849 AC004945.1-201ENST00000416738 983 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.57■□□□□ 0.56
COL9A1P20849 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.57■□□□□ 0.56
COL9A1P20849 FAM86GP-201ENST00000448322 971 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 TSPY16P-201ENST00000449843 468 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.57■□□□□ 0.56
COL9A1P20849 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.57■□□□□ 0.56
COL9A1P20849 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 AC093520.2-201ENST00000561830 333 ntBASIC18.57■□□□□ 0.56
COL9A1P20849 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.57■□□□□ 0.56
COL9A1P20849 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL9A1P20849 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL9A1P20849 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL9A1P20849 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.57■□□□□ 0.56
COL9A1P20849 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.56■□□□□ 0.56
COL9A1P20849 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL9A1P20849 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.56■□□□□ 0.56
COL9A1P20849 AC098799.1-201ENST00000504752 800 ntBASIC18.56■□□□□ 0.56
COL9A1P20849 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.56■□□□□ 0.56
COL9A1P20849 AP000344.2-201ENST00000512987 629 ntBASIC18.56■□□□□ 0.56
COL9A1P20849 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.56■□□□□ 0.56
COL9A1P20849 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.56■□□□□ 0.56
COL9A1P20849 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.56■□□□□ 0.56
COL9A1P20849 AL358472.5-202ENST00000641448 1267 ntBASIC18.56■□□□□ 0.56
COL9A1P20849 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL9A1P20849 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL9A1P20849 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL9A1P20849 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.55■□□□□ 0.56
COL9A1P20849 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.55■□□□□ 0.56
COL9A1P20849 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.55■□□□□ 0.56
COL9A1P20849 ARSEP1-201ENST00000420443 635 ntBASIC18.55■□□□□ 0.56
COL9A1P20849 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.55■□□□□ 0.56
COL9A1P20849 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.55■□□□□ 0.56
COL9A1P20849 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.55■□□□□ 0.56
COL9A1P20849 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL9A1P20849 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.55■□□□□ 0.56
COL9A1P20849 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.55■□□□□ 0.56
COL9A1P20849 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms