Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AC079781.3-201ENST00000449110 356 ntBASIC18.58■□□□□ 0.56
TOP3BO95985 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.58■□□□□ 0.56
TOP3BO95985 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.58■□□□□ 0.56
TOP3BO95985 AC079776.4-201ENST00000511039 504 ntBASIC18.58■□□□□ 0.56
TOP3BO95985 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.58■□□□□ 0.56
TOP3BO95985 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.58■□□□□ 0.56
TOP3BO95985 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
TOP3BO95985 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
TOP3BO95985 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
TOP3BO95985 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
TOP3BO95985 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TOP3BO95985 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TOP3BO95985 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
TOP3BO95985 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TOP3BO95985 AL357033.4-201ENST00000617703 1807 ntBASIC18.58■□□□□ 0.56
TOP3BO95985 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.58■□□□□ 0.56
TOP3BO95985 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TOP3BO95985 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
TOP3BO95985 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.57■□□□□ 0.56
TOP3BO95985 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.57■□□□□ 0.56
TOP3BO95985 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.57■□□□□ 0.56
TOP3BO95985 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.57■□□□□ 0.56
TOP3BO95985 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.57■□□□□ 0.56
TOP3BO95985 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.57■□□□□ 0.56
TOP3BO95985 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TOP3BO95985 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
TOP3BO95985 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.57■□□□□ 0.56
TOP3BO95985 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TOP3BO95985 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.56■□□□□ 0.56
TOP3BO95985 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
TOP3BO95985 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.56■□□□□ 0.56
TOP3BO95985 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.56■□□□□ 0.56
TOP3BO95985 AL732292.2-201ENST00000609649 430 ntBASIC18.56■□□□□ 0.56
TOP3BO95985 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.56■□□□□ 0.56
TOP3BO95985 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.56■□□□□ 0.56
TOP3BO95985 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TOP3BO95985 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TOP3BO95985 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TOP3BO95985 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
TOP3BO95985 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.55■□□□□ 0.56
TOP3BO95985 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.55■□□□□ 0.56
TOP3BO95985 TSSC2-201ENST00000450217 709 ntBASIC18.55■□□□□ 0.56
TOP3BO95985 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.55■□□□□ 0.56
TOP3BO95985 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
TOP3BO95985 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.55■□□□□ 0.56
TOP3BO95985 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.55■□□□□ 0.56
TOP3BO95985 AL671883.3-201ENST00000603274 991 ntBASIC18.55■□□□□ 0.56
TOP3BO95985 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.55■□□□□ 0.56
TOP3BO95985 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TOP3BO95985 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TOP3BO95985 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.55■□□□□ 0.56
TOP3BO95985 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms