Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS4BO75351 B3GAT3P1-201ENST00000471720 806 ntBASIC17.8■□□□□ 0.44
VPS4BO75351 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.8■□□□□ 0.44
VPS4BO75351 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS4BO75351 AC139887.4-201ENST00000607877 719 ntBASIC17.8■□□□□ 0.44
VPS4BO75351 FAM87A-204ENST00000613235 858 ntBASIC17.8■□□□□ 0.44
VPS4BO75351 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
VPS4BO75351 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
VPS4BO75351 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VPS4BO75351 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS4BO75351 LTB4R2-202ENST00000528054 3092 ntBASIC17.8■□□□□ 0.44
VPS4BO75351 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS4BO75351 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS4BO75351 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VPS4BO75351 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VPS4BO75351 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS4BO75351 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VPS4BO75351 MESTP1-201ENST00000404287 994 ntBASIC17.79■□□□□ 0.44
VPS4BO75351 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 MCCD1P1-208ENST00000445732 328 ntBASIC17.79■□□□□ 0.44
VPS4BO75351 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.79■□□□□ 0.44
VPS4BO75351 SLC25A1P4-201ENST00000567977 778 ntBASIC17.79■□□□□ 0.44
VPS4BO75351 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
VPS4BO75351 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS4BO75351 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS4BO75351 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
VPS4BO75351 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS4BO75351 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 AL023284.2-201ENST00000405850 579 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 AL450487.1-201ENST00000426799 995 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 TSPY5P-201ENST00000426936 936 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS4BO75351 AP000692.2-201ENST00000608391 879 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 AC093458.2-201ENST00000623150 629 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 AC116562.4-202ENST00000641738 218 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS4BO75351 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 AL096828.2-201ENST00000567259 1965 ntBASIC17.78■□□□□ 0.44
VPS4BO75351 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VPS4BO75351 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS4BO75351 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS4BO75351 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS4BO75351 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS4BO75351 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4BO75351 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4BO75351 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4BO75351 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS4BO75351 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms