Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 MIR574-201ENST00000385209 96 ntBASIC17.69■□□□□ 0.42
SDC3O75056 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 PMS2P1-201ENST00000431037 1228 ntBASIC17.69■□□□□ 0.42
SDC3O75056 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.69■□□□□ 0.42
SDC3O75056 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SDC3O75056 AC093909.1-201ENST00000504731 1122 ntBASIC17.69■□□□□ 0.42
SDC3O75056 RNPS1P1-201ENST00000507437 918 ntBASIC17.69■□□□□ 0.42
SDC3O75056 AC073648.2-201ENST00000510116 352 ntBASIC17.69■□□□□ 0.42
SDC3O75056 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.69■□□□□ 0.42
SDC3O75056 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.69■□□□□ 0.42
SDC3O75056 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 MIR7706-201ENST00000613747 67 ntBASIC17.69■□□□□ 0.42
SDC3O75056 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.69■□□□□ 0.42
SDC3O75056 AC009154.2-201ENST00000621177 724 ntBASIC17.69■□□□□ 0.42
SDC3O75056 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.69■□□□□ 0.42
SDC3O75056 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SDC3O75056 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SDC3O75056 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 AC138932.1-201ENST00000534164 6830 ntBASIC17.68■□□□□ 0.42
SDC3O75056 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.68■□□□□ 0.42
SDC3O75056 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SDC3O75056 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.68■□□□□ 0.42
SDC3O75056 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 FGFR3P6-201ENST00000457012 610 ntBASIC17.68■□□□□ 0.42
SDC3O75056 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SDC3O75056 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.68■□□□□ 0.42
SDC3O75056 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
SDC3O75056 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 AL355877.3-201ENST00000622820 899 ntBASIC17.68■□□□□ 0.42
SDC3O75056 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC3O75056 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC3O75056 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SDC3O75056 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 AC018712.1-201ENST00000455767 687 ntBASIC17.67■□□□□ 0.42
SDC3O75056 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 AC009533.2-201ENST00000543664 586 ntBASIC17.67■□□□□ 0.42
SDC3O75056 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC3O75056 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC3O75056 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC3O75056 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC3O75056 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC3O75056 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SDC3O75056 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.67■□□□□ 0.42
SDC3O75056 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.67■□□□□ 0.42
SDC3O75056 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC3O75056 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SDC3O75056 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
SDC3O75056 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC3O75056 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SDC3O75056 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms