Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ZIC3O60481 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZIC3O60481 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZIC3O60481 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZIC3O60481 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.29■□□□□ 0.2
ZIC3O60481 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.29■□□□□ 0.2
ZIC3O60481 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZIC3O60481 REXO1L9P-201ENST00000604264 2108 ntBASIC16.28■□□□□ 0.2
ZIC3O60481 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.28■□□□□ 0.2
ZIC3O60481 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZIC3O60481 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
ZIC3O60481 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 KRT17P6-201ENST00000453795 1220 ntBASIC16.28■□□□□ 0.2
ZIC3O60481 AC112698.1-201ENST00000510299 916 ntBASIC16.28■□□□□ 0.2
ZIC3O60481 AC012615.1-201ENST00000565797 1299 ntBASIC16.28■□□□□ 0.2
ZIC3O60481 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
ZIC3O60481 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.28■□□□□ 0.2
ZIC3O60481 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZIC3O60481 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.28■□□□□ 0.2
ZIC3O60481 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.28■□□□□ 0.2
ZIC3O60481 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZIC3O60481 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
ZIC3O60481 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.28■□□□□ 0.2
ZIC3O60481 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ZIC3O60481 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.27■□□□□ 0.2
ZIC3O60481 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.27■□□□□ 0.2
ZIC3O60481 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.27■□□□□ 0.2
ZIC3O60481 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
ZIC3O60481 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
ZIC3O60481 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 IGHV3-47-201ENST00000425060 335 ntBASIC16.27■□□□□ 0.2
ZIC3O60481 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.27■□□□□ 0.2
ZIC3O60481 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.27■□□□□ 0.2
ZIC3O60481 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZIC3O60481 CLEC4GP1-201ENST00000596555 870 ntBASIC16.27■□□□□ 0.2
ZIC3O60481 Z69720.1-201ENST00000601483 472 ntBASIC16.27■□□□□ 0.2
ZIC3O60481 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZIC3O60481 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZIC3O60481 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ZIC3O60481 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.27■□□□□ 0.19
ZIC3O60481 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ZIC3O60481 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ZIC3O60481 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZIC3O60481 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.26■□□□□ 0.19
ZIC3O60481 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 NUS1P1-201ENST00000446295 882 ntBASIC16.26■□□□□ 0.19
ZIC3O60481 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 VENTXP7-201ENST00000475503 772 ntBASIC16.26■□□□□ 0.19
ZIC3O60481 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.26■□□□□ 0.19
ZIC3O60481 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.26■□□□□ 0.19
ZIC3O60481 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.26■□□□□ 0.19
ZIC3O60481 AC074051.2-201ENST00000565115 352 ntBASIC16.26■□□□□ 0.19
ZIC3O60481 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.26■□□□□ 0.19
ZIC3O60481 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZIC3O60481 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
ZIC3O60481 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.26■□□□□ 0.19
ZIC3O60481 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms