Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.06■□□□□ 0.16
SGCEO43556 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SGCEO43556 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SGCEO43556 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SGCEO43556 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SGCEO43556 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SGCEO43556 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SGCEO43556 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 ATP5G1P1-201ENST00000448724 379 ntBASIC16.05■□□□□ 0.16
SGCEO43556 SEC1P-202ENST00000473944 940 ntBASIC16.05■□□□□ 0.16
SGCEO43556 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 AC141257.4-201ENST00000634557 245 ntBASIC16.05■□□□□ 0.16
SGCEO43556 AC136944.6-201ENST00000634818 245 ntBASIC16.05■□□□□ 0.16
SGCEO43556 AC092865.7-201ENST00000641832 219 ntBASIC16.05■□□□□ 0.16
SGCEO43556 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 AC093677.2-201ENST00000600169 1863 ntBASIC16.05■□□□□ 0.16
SGCEO43556 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.05■□□□□ 0.16
SGCEO43556 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SGCEO43556 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SGCEO43556 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SGCEO43556 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.04■□□□□ 0.16
SGCEO43556 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.04■□□□□ 0.16
SGCEO43556 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SGCEO43556 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.04■□□□□ 0.16
SGCEO43556 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.04■□□□□ 0.16
SGCEO43556 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SGCEO43556 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.04■□□□□ 0.16
SGCEO43556 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.04■□□□□ 0.16
SGCEO43556 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.04■□□□□ 0.16
SGCEO43556 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.04■□□□□ 0.16
SGCEO43556 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SGCEO43556 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SGCEO43556 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.03■□□□□ 0.16
SGCEO43556 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.03■□□□□ 0.16
SGCEO43556 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.03■□□□□ 0.16
SGCEO43556 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SGCEO43556 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SGCEO43556 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.03■□□□□ 0.16
SGCEO43556 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms