Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 KRT17P6-201ENST00000453795 1220 ntBASIC20.31■□□□□ 0.84
MSH4O15457 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 AC012615.1-201ENST00000565797 1299 ntBASIC20.31■□□□□ 0.84
MSH4O15457 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH4O15457 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 AC135050.7-201ENST00000624508 2218 ntBASIC20.31■□□□□ 0.84
MSH4O15457 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH4O15457 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MSH4O15457 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 ABALON-201ENST00000629058 1903 ntBASIC20.3■□□□□ 0.84
MSH4O15457 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.3■□□□□ 0.84
MSH4O15457 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.3■□□□□ 0.84
MSH4O15457 AC074051.2-201ENST00000565115 352 ntBASIC20.3■□□□□ 0.84
MSH4O15457 AC005336.2-201ENST00000593183 939 ntBASIC20.3■□□□□ 0.84
MSH4O15457 Z69720.1-201ENST00000601483 472 ntBASIC20.3■□□□□ 0.84
MSH4O15457 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MSH4O15457 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH4O15457 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
MSH4O15457 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH4O15457 NEFHP1-201ENST00000412845 2629 ntBASIC20.29■□□□□ 0.84
MSH4O15457 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
MSH4O15457 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 DUSP5P1-201ENST00000441325 1139 ntBASIC20.29■□□□□ 0.84
MSH4O15457 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.29■□□□□ 0.84
MSH4O15457 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH4O15457 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.29■□□□□ 0.84
MSH4O15457 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH4O15457 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
MSH4O15457 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH4O15457 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.29■□□□□ 0.84
MSH4O15457 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH4O15457 AP000997.3-201ENST00000623333 2250 ntBASIC20.29■□□□□ 0.84
MSH4O15457 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MSH4O15457 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH4O15457 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms