Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TCRBV7S3A2A0A539 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AC009065.1-201ENST00000564055 1225 ntBASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AP006294.2-201ENST00000641667 209 ntBASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
TCRBV7S3A2A0A539 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 AL355312.1-201ENST00000407115 2176 ntBASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TCRBV7S3A2A0A539 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TCRBV7S3A2A0A539 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms