Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ESPNP-201ENST00000270691 2015 ntBASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 AC016734.2-201ENST00000624325 1377 ntBASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.98■□□□□ 0.47
TRIM39Q9HCM9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 AL353692.3-201ENST00000407031 1396 ntBASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TRIM39Q9HCM9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AC104581.1-202ENST00000635932 2618 ntBASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.96■□□□□ 0.47
TRIM39Q9HCM9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms