Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AL035633.1-201ENST00000406139 838 ntBASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 KRT18P2-201ENST00000447938 1258 ntBASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 YBX1P5-201ENST00000509441 847 ntBASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AC027612.4-201ENST00000605371 583 ntBASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC23.38■■□□□ 1.33
SHANK3Q9BYB0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 SPDYE21P-201ENST00000413323 827 ntBASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 HTR5BP-201ENST00000430851 1154 ntBASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.37■■□□□ 1.33
SHANK3Q9BYB0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 CALY-203ENST00000368558 825 ntTSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 MCCD1P2-201ENST00000423228 335 ntBASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 AC018845.2-201ENST00000568326 409 ntBASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 AL022326.1-202ENST00000641533 845 ntBASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC23.36■■□□□ 1.33
SHANK3Q9BYB0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 AC004817.3-201ENST00000602957 2129 ntBASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 AL353593.2-201ENST00000602529 1483 ntBASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC23.35■■□□□ 1.33
SHANK3Q9BYB0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
SHANK3Q9BYB0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SHANK3Q9BYB0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms