Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 WIZP1-201ENST00000531444 2299 ntBASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.31■□□□□ 0.68
PAAF1Q9BRP4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 AP001269.4-201ENST00000609611 512 ntBASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.3■□□□□ 0.68
PAAF1Q9BRP4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 FAM197Y8-203ENST00000450145 560 ntBASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 AC009533.2-201ENST00000543664 586 ntBASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 AC011467.2-201ENST00000598425 242 ntBASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 AC008608.2-201ENST00000606089 416 ntBASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 AIRN-201ENST00000601203 4374 ntBASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.29■□□□□ 0.68
PAAF1Q9BRP4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC018445.3-201ENST00000624177 1945 ntBASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AL662844.1-201ENST00000546340 181 ntBASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms