Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CPNE1Q99829 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE1Q99829 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE1Q99829 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE1Q99829 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.16■□□□□ 0.5
CPNE1Q99829 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 AL390955.1-201ENST00000428694 934 ntBASIC18.16■□□□□ 0.5
CPNE1Q99829 TSPY7P-201ENST00000431358 1114 ntBASIC18.16■□□□□ 0.5
CPNE1Q99829 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 AC008550.1-201ENST00000511500 884 ntBASIC18.16■□□□□ 0.5
CPNE1Q99829 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CPNE1Q99829 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.16■□□□□ 0.5
CPNE1Q99829 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CPNE1Q99829 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE1Q99829 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE1Q99829 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE1Q99829 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE1Q99829 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE1Q99829 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE1Q99829 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.15■□□□□ 0.5
CPNE1Q99829 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.15■□□□□ 0.5
CPNE1Q99829 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CPNE1Q99829 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE1Q99829 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.15■□□□□ 0.5
CPNE1Q99829 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 AC010240.3-201ENST00000607688 395 ntBASIC18.15■□□□□ 0.5
CPNE1Q99829 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 OR6D1P-202ENST00000641007 5290 ntBASIC18.15■□□□□ 0.5
CPNE1Q99829 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.15■□□□□ 0.5
CPNE1Q99829 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE1Q99829 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CPNE1Q99829 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE1Q99829 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPNE1Q99829 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.14■□□□□ 0.5
CPNE1Q99829 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPNE1Q99829 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
CPNE1Q99829 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 TSPY14P-201ENST00000303979 915 ntBASIC18.14■□□□□ 0.49
CPNE1Q99829 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.14■□□□□ 0.49
CPNE1Q99829 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CPNE1Q99829 MIR1238-201ENST00000408483 83 ntBASIC18.14■□□□□ 0.49
CPNE1Q99829 DUTP2-201ENST00000519164 463 ntBASIC18.14■□□□□ 0.49
CPNE1Q99829 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.14■□□□□ 0.49
CPNE1Q99829 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.14■□□□□ 0.49
CPNE1Q99829 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CPNE1Q99829 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE1Q99829 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE1Q99829 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE1Q99829 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE1Q99829 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CPNE1Q99829 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms