Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 AC024563.2-201ENST00000603282 481 ntBASIC14.06□□□□□ -0.16
CCDC140Q96MF4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 LINC00167-201ENST00000530583 1419 ntBASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC140Q96MF4 KRT89P-201ENST00000620027 1478 ntBASIC14.06□□□□□ -0.16
CCDC140Q96MF4 NOC2LP2-201ENST00000407594 1944 ntBASIC14.05□□□□□ -0.16
CCDC140Q96MF4 AL133373.2-201ENST00000623187 2828 ntBASIC14.05□□□□□ -0.16
CCDC140Q96MF4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 AC113404.2-201ENST00000507884 177 ntBASIC14.05□□□□□ -0.16
CCDC140Q96MF4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 HYMAI.1-201ENST00000620949 238 ntBASIC14.05□□□□□ -0.16
CCDC140Q96MF4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC140Q96MF4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 AC008764.6-201ENST00000595909 2069 ntBASIC14.04□□□□□ -0.16
CCDC140Q96MF4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 VENTXP5-201ENST00000523979 775 ntBASIC14.04□□□□□ -0.16
CCDC140Q96MF4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC140Q96MF4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 LINC00602-201ENST00000629776 2065 ntBASIC14.03□□□□□ -0.16
CCDC140Q96MF4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC140Q96MF4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms