Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 AC004790.2-201ENST00000623588 572 ntBASIC18.28■□□□□ 0.52
TTC28Q96AY4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TTC28Q96AY4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.28■□□□□ 0.52
TTC28Q96AY4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.28■□□□□ 0.52
TTC28Q96AY4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 TUBB3P1-201ENST00000405796 1332 ntBASIC18.27■□□□□ 0.52
TTC28Q96AY4 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.27■□□□□ 0.52
TTC28Q96AY4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TTC28Q96AY4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 SLC25A39P2-201ENST00000537614 270 ntBASIC18.27■□□□□ 0.51
TTC28Q96AY4 AC106886.1-201ENST00000568660 600 ntBASIC18.27■□□□□ 0.51
TTC28Q96AY4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 AC008667.4-201ENST00000607370 168 ntBASIC18.27■□□□□ 0.51
TTC28Q96AY4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TTC28Q96AY4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
TTC28Q96AY4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 AC023141.13-201ENST00000604991 943 ntBASIC18.26■□□□□ 0.51
TTC28Q96AY4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.26■□□□□ 0.51
TTC28Q96AY4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TTC28Q96AY4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TTC28Q96AY4 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TTC28Q96AY4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms