Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 AC098831.1-202ENST00000438821 336 ntBASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USHBP1Q8N6Y0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 ZNF259P1-201ENST00000407656 1365 ntBASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 NKAPP1-205ENST00000585790 367 ntBASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USHBP1Q8N6Y0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
USHBP1Q8N6Y0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.83■■□□□ 1.4
USHBP1Q8N6Y0 ESPNP-201ENST00000270691 2015 ntBASIC23.83■■□□□ 1.4
USHBP1Q8N6Y0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 SNCG-201ENST00000348795 684 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 BX842568.4-201ENST00000421222 227 ntBASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 OR7E14P-202ENST00000530490 1290 ntBASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC23.82■■□□□ 1.4
USHBP1Q8N6Y0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 MIR1233-2-201ENST00000408138 82 ntBASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 MIR1233-1-201ENST00000408722 82 ntBASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 AC007967.3-201ENST00000434308 558 ntBASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 PGAM5P1-201ENST00000518923 814 ntBASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 AC034105.1-201ENST00000563488 319 ntBASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.81■■□□□ 1.4
USHBP1Q8N6Y0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms