Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC116Q8IYX3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC116Q8IYX3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 AC117947.1-201ENST00000427448 529 ntBASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 PVRIG2P-201ENST00000435460 978 ntBASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC116Q8IYX3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 RASA4DP-201ENST00000460726 1199 ntBASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC116Q8IYX3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC116Q8IYX3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms