Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
RC3H1Q5TC82 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 SPDYE21P-201ENST00000413323 827 ntBASIC22.77■■□□□ 1.24
RC3H1Q5TC82 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
RC3H1Q5TC82 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.77■■□□□ 1.23
RC3H1Q5TC82 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 KRT18P28-201ENST00000453838 1332 ntBASIC22.76■■□□□ 1.23
RC3H1Q5TC82 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
RC3H1Q5TC82 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AC132938.6-201ENST00000623828 1655 ntBASIC22.75■■□□□ 1.23
RC3H1Q5TC82 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AL589182.2-201ENST00000619332 1049 ntBASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AC010460.3-201ENST00000511359 1579 ntBASIC22.75■■□□□ 1.23
RC3H1Q5TC82 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 AC004817.3-201ENST00000602957 2129 ntBASIC22.75■■□□□ 1.23
RC3H1Q5TC82 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
RC3H1Q5TC82 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
RC3H1Q5TC82 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 AC103564.2-201ENST00000432853 1299 ntBASIC22.73■■□□□ 1.23
RC3H1Q5TC82 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
RC3H1Q5TC82 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms