Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 CROCCP3-202ENST00000420820 1947 ntBASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNFT1Q5M7Z0 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 ESPNP-201ENST00000270691 2015 ntBASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 AC009533.2-201ENST00000543664 586 ntBASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 AC008608.2-201ENST00000606089 416 ntBASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 AC132938.6-201ENST00000623828 1655 ntBASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 GMCL1P1-201ENST00000463439 1581 ntBASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RNFT1Q5M7Z0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 INTS4P1-201ENST00000438455 1935 ntBASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 AC112698.1-201ENST00000510299 916 ntBASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 AP001269.4-201ENST00000609611 512 ntBASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 AC120498.9-201ENST00000339021 3867 ntBASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNFT1Q5M7Z0 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AC011467.2-201ENST00000598425 242 ntBASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AL355877.3-201ENST00000622820 899 ntBASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.28■□□□□ 0.2
RNFT1Q5M7Z0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms