Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC018845.2-201ENST00000568326 409 ntBASIC20.96■□□□□ 0.95
CTCFP49711 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.96■□□□□ 0.95
CTCFP49711 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 AL138831.2-201ENST00000606564 490 ntBASIC20.96■□□□□ 0.95
CTCFP49711 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.96■□□□□ 0.95
CTCFP49711 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 AC034236.2-201ENST00000606662 1610 ntBASIC20.96■□□□□ 0.95
CTCFP49711 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.96■□□□□ 0.95
CTCFP49711 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CTCFP49711 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CTCFP49711 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CTCFP49711 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 AC236430.1-201ENST00000402231 743 ntBASIC20.95■□□□□ 0.94
CTCFP49711 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.95■□□□□ 0.94
CTCFP49711 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 AC093214.1-201ENST00000511688 1107 ntBASIC20.95■□□□□ 0.94
CTCFP49711 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.95■□□□□ 0.94
CTCFP49711 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CTCFP49711 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CTCFP49711 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.95■□□□□ 0.94
CTCFP49711 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.95■□□□□ 0.94
CTCFP49711 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.95■□□□□ 0.94
CTCFP49711 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CTCFP49711 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CTCFP49711 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.94■□□□□ 0.94
CTCFP49711 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CTCFP49711 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CTCFP49711 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 AC002472.2-201ENST00000442739 958 ntBASIC20.94■□□□□ 0.94
CTCFP49711 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.94■□□□□ 0.94
CTCFP49711 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.94■□□□□ 0.94
CTCFP49711 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.94■□□□□ 0.94
CTCFP49711 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.94■□□□□ 0.94
CTCFP49711 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CTCFP49711 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CTCFP49711 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.93■□□□□ 0.94
CTCFP49711 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CTCFP49711 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.93■□□□□ 0.94
CTCFP49711 ACTG1P14-201ENST00000446382 1122 ntBASIC20.93■□□□□ 0.94
CTCFP49711 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.93■□□□□ 0.94
CTCFP49711 AC136632.2-201ENST00000512891 861 ntBASIC20.93■□□□□ 0.94
CTCFP49711 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.93■□□□□ 0.94
CTCFP49711 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.93■□□□□ 0.94
CTCFP49711 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 AC006333.2-201ENST00000607957 2099 ntBASIC20.93■□□□□ 0.94
CTCFP49711 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
CTCFP49711 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.93■□□□□ 0.94
CTCFP49711 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.93■□□□□ 0.94
CTCFP49711 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CTCFP49711 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms