Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
RFX3P48380 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX3P48380 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX3P48380 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX3P48380 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RFX3P48380 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.08■□□□□ 0.33
RFX3P48380 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
RFX3P48380 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RFX3P48380 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
RFX3P48380 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.08■□□□□ 0.33
RFX3P48380 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.08■□□□□ 0.33
RFX3P48380 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.08■□□□□ 0.32
RFX3P48380 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RFX3P48380 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 KRT18P57-201ENST00000443599 1254 ntBASIC17.08■□□□□ 0.32
RFX3P48380 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.08■□□□□ 0.32
RFX3P48380 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.08■□□□□ 0.32
RFX3P48380 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RFX3P48380 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 LINC01023-201ENST00000606054 436 ntBASIC17.08■□□□□ 0.32
RFX3P48380 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RFX3P48380 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX3P48380 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
RFX3P48380 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.07■□□□□ 0.32
RFX3P48380 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 NFIC-211ENST00000641145 8399 ntBASIC17.07■□□□□ 0.32
RFX3P48380 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
RFX3P48380 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.07■□□□□ 0.32
RFX3P48380 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RFX3P48380 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
RFX3P48380 AC141257.4-201ENST00000634557 245 ntBASIC17.07■□□□□ 0.32
RFX3P48380 AC136944.6-201ENST00000634818 245 ntBASIC17.07■□□□□ 0.32
RFX3P48380 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX3P48380 PCDHB18P-201ENST00000524813 2368 ntBASIC17.07■□□□□ 0.32
RFX3P48380 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RFX3P48380 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX3P48380 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX3P48380 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.06■□□□□ 0.32
RFX3P48380 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RFX3P48380 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX3P48380 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
RFX3P48380 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX3P48380 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX3P48380 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
RFX3P48380 AC113347.1-201ENST00000413321 391 ntBASIC17.06■□□□□ 0.32
RFX3P48380 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms