Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC30.27■■■□□ 2.44
CUX1P39880 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC30.27■■■□□ 2.44
CUX1P39880 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CUX1P39880 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
CUX1P39880 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
CUX1P39880 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CUX1P39880 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC30.26■■■□□ 2.43
CUX1P39880 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC30.26■■■□□ 2.43
CUX1P39880 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
CUX1P39880 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC30.26■■■□□ 2.43
CUX1P39880 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC30.26■■■□□ 2.43
CUX1P39880 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC30.26■■■□□ 2.43
CUX1P39880 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC30.26■■■□□ 2.43
CUX1P39880 AC092865.6-201ENST00000642101 219 ntBASIC30.26■■■□□ 2.43
CUX1P39880 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CUX1P39880 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CUX1P39880 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC30.25■■■□□ 2.43
CUX1P39880 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC30.25■■■□□ 2.43
CUX1P39880 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CUX1P39880 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC30.25■■■□□ 2.43
CUX1P39880 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC30.25■■■□□ 2.43
CUX1P39880 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CUX1P39880 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC30.24■■■□□ 2.43
CUX1P39880 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC30.24■■■□□ 2.43
CUX1P39880 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC30.24■■■□□ 2.43
CUX1P39880 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC30.24■■■□□ 2.43
CUX1P39880 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC30.24■■■□□ 2.43
CUX1P39880 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CUX1P39880 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
CUX1P39880 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX1P39880 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC30.23■■■□□ 2.43
CUX1P39880 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX1P39880 HTR5BP-201ENST00000430851 1154 ntBASIC30.23■■■□□ 2.43
CUX1P39880 RPS15-207ENST00000591032 550 ntTSL 3 BASIC30.23■■■□□ 2.43
CUX1P39880 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC30.23■■■□□ 2.43
CUX1P39880 PGM5P2-202ENST00000637225 1043 ntBASIC30.23■■■□□ 2.43
CUX1P39880 AC079781.4-201ENST00000641908 219 ntBASIC30.23■■■□□ 2.43
CUX1P39880 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC30.23■■■□□ 2.43
CUX1P39880 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX1P39880 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC30.23■■■□□ 2.43
CUX1P39880 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CUX1P39880 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CUX1P39880 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC30.23■■■□□ 2.43
CUX1P39880 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX1P39880 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
CUX1P39880 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CUX1P39880 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 PRYP5-201ENST00000451909 266 ntBASIC30.22■■■□□ 2.43
CUX1P39880 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
CUX1P39880 AC027612.4-201ENST00000605371 583 ntBASIC30.22■■■□□ 2.43
CUX1P39880 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC30.22■■■□□ 2.43
CUX1P39880 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 ADM-208ENST00000534464 1640 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
CUX1P39880 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CUX1P39880 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CUX1P39880 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC30.22■■■□□ 2.43
CUX1P39880 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC30.22■■■□□ 2.43
CUX1P39880 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC30.22■■■□□ 2.43
CUX1P39880 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC30.22■■■□□ 2.43
CUX1P39880 AC005593.1-201ENST00000624894 515 ntBASIC30.22■■■□□ 2.43
CUX1P39880 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC30.21■■■□□ 2.43
CUX1P39880 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC30.21■■■□□ 2.43
CUX1P39880 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC30.21■■■□□ 2.43
CUX1P39880 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC30.21■■■□□ 2.43
CUX1P39880 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
CUX1P39880 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC30.21■■■□□ 2.43
CUX1P39880 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC30.21■■■□□ 2.43
CUX1P39880 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC30.21■■■□□ 2.43
CUX1P39880 AL513190.1-201ENST00000621254 727 ntBASIC30.21■■■□□ 2.43
CUX1P39880 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CUX1P39880 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC30.2■■■□□ 2.43
CUX1P39880 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX1P39880 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CUX1P39880 ANO7L1-203ENST00000602586 1720 ntBASIC30.2■■■□□ 2.43
CUX1P39880 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC30.2■■■□□ 2.42
CUX1P39880 AC006504.4-201ENST00000592118 1568 ntBASIC30.2■■■□□ 2.42
CUX1P39880 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC30.2■■■□□ 2.42
CUX1P39880 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC30.2■■■□□ 2.42
CUX1P39880 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC30.2■■■□□ 2.42
CUX1P39880 AC018845.2-201ENST00000568326 409 ntBASIC30.2■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms