Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
CIITAP33076 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.41■□□□□ 0.86
CIITAP33076 AC011840.4-201ENST00000578471 627 ntBASIC20.41■□□□□ 0.86
CIITAP33076 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.41■□□□□ 0.86
CIITAP33076 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CIITAP33076 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.41■□□□□ 0.86
CIITAP33076 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CIITAP33076 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
CIITAP33076 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.4■□□□□ 0.86
CIITAP33076 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.4■□□□□ 0.86
CIITAP33076 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
CIITAP33076 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.4■□□□□ 0.86
CIITAP33076 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.4■□□□□ 0.86
CIITAP33076 KRT18P56-201ENST00000507275 550 ntBASIC20.4■□□□□ 0.86
CIITAP33076 AC112698.1-201ENST00000510299 916 ntBASIC20.4■□□□□ 0.86
CIITAP33076 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.4■□□□□ 0.86
CIITAP33076 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CIITAP33076 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.4■□□□□ 0.86
CIITAP33076 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
CIITAP33076 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CIITAP33076 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
CIITAP33076 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CIITAP33076 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CIITAP33076 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.39■□□□□ 0.85
CIITAP33076 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CIITAP33076 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.39■□□□□ 0.85
CIITAP33076 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.39■□□□□ 0.85
CIITAP33076 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.39■□□□□ 0.85
CIITAP33076 AC012615.1-201ENST00000565797 1299 ntBASIC20.39■□□□□ 0.85
CIITAP33076 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.39■□□□□ 0.85
CIITAP33076 Z69720.1-201ENST00000601483 472 ntBASIC20.39■□□□□ 0.85
CIITAP33076 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.39■□□□□ 0.85
CIITAP33076 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CIITAP33076 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CIITAP33076 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.38■□□□□ 0.85
CIITAP33076 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.38■□□□□ 0.85
CIITAP33076 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
CIITAP33076 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 KRT17P6-201ENST00000453795 1220 ntBASIC20.38■□□□□ 0.85
CIITAP33076 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.38■□□□□ 0.85
CIITAP33076 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.38■□□□□ 0.85
CIITAP33076 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.38■□□□□ 0.85
CIITAP33076 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.38■□□□□ 0.85
CIITAP33076 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CIITAP33076 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CIITAP33076 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms