Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PTPN6P29350 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PTPN6P29350 AL645608.8-201ENST00000606034 2086 ntBASIC17.24■□□□□ 0.35
PTPN6P29350 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PTPN6P29350 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PTPN6P29350 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN6P29350 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.24■□□□□ 0.35
PTPN6P29350 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.24■□□□□ 0.35
PTPN6P29350 AP003041.3-201ENST00000527151 707 ntBASIC17.24■□□□□ 0.35
PTPN6P29350 AC092865.7-201ENST00000641832 219 ntBASIC17.24■□□□□ 0.35
PTPN6P29350 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN6P29350 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PTPN6P29350 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN6P29350 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN6P29350 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN6P29350 KRT8P7-201ENST00000533003 1432 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 KRT18P55-202ENST00000578578 1546 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN6P29350 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN6P29350 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN6P29350 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN6P29350 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 WWOX-216ENST00000569818 525 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 RN7SL850P-201ENST00000579959 291 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PTPN6P29350 CR769767.2-201ENST00000622735 460 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PTPN6P29350 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PTPN6P29350 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 PP12613-201ENST00000424958 2230 ntBASIC17.23■□□□□ 0.35
PTPN6P29350 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN6P29350 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN6P29350 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN6P29350 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN6P29350 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.22■□□□□ 0.35
PTPN6P29350 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN6P29350 LIN28AP1-201ENST00000429574 405 ntBASIC17.22■□□□□ 0.35
PTPN6P29350 KRT18P57-201ENST00000443599 1254 ntBASIC17.22■□□□□ 0.35
PTPN6P29350 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PTPN6P29350 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
PTPN6P29350 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
PTPN6P29350 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PTPN6P29350 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN6P29350 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN6P29350 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN6P29350 AL024508.2-201ENST00000607749 1894 ntBASIC17.22■□□□□ 0.35
PTPN6P29350 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN6P29350 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN6P29350 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN6P29350 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN6P29350 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN6P29350 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN6P29350 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN6P29350 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN6P29350 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN6P29350 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN6P29350 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN6P29350 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN6P29350 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms