Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.26■□□□□ 0.51
VIMP08670 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.26■□□□□ 0.51
VIMP08670 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.26■□□□□ 0.51
VIMP08670 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VIMP08670 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.26■□□□□ 0.51
VIMP08670 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.26■□□□□ 0.51
VIMP08670 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.26■□□□□ 0.51
VIMP08670 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 HLA-A-209ENST00000638375 975 ntBASIC18.26■□□□□ 0.51
VIMP08670 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VIMP08670 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.26■□□□□ 0.51
VIMP08670 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VIMP08670 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.25■□□□□ 0.51
VIMP08670 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.25■□□□□ 0.51
VIMP08670 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VIMP08670 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 BX276092.2-201ENST00000417668 665 ntBASIC18.25■□□□□ 0.51
VIMP08670 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VIMP08670 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 AL356309.3-201ENST00000624132 1934 ntBASIC18.25■□□□□ 0.51
VIMP08670 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.25■□□□□ 0.51
VIMP08670 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VIMP08670 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 KRT8P3-201ENST00000519669 1449 ntBASIC18.24■□□□□ 0.51
VIMP08670 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
VIMP08670 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VIMP08670 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.24■□□□□ 0.51
VIMP08670 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.24■□□□□ 0.51
VIMP08670 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.24■□□□□ 0.51
VIMP08670 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.24■□□□□ 0.51
VIMP08670 AL121829.2-201ENST00000620908 328 ntBASIC18.24■□□□□ 0.51
VIMP08670 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VIMP08670 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VIMP08670 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
VIMP08670 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.23■□□□□ 0.51
VIMP08670 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.23■□□□□ 0.51
VIMP08670 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VIMP08670 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms