Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CDKL5O76039 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 HOMER2P1-201ENST00000455653 964 ntBASIC21.12■□□□□ 0.97
CDKL5O76039 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 AL136038.4-201ENST00000603606 1261 ntBASIC21.12■□□□□ 0.97
CDKL5O76039 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.12■□□□□ 0.97
CDKL5O76039 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDKL5O76039 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDKL5O76039 KRT89P-201ENST00000620027 1478 ntBASIC21.12■□□□□ 0.97
CDKL5O76039 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.12■□□□□ 0.97
CDKL5O76039 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDKL5O76039 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 AL391807.1-203ENST00000604392 2365 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.11■□□□□ 0.97
CDKL5O76039 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 FAM8A6P-201ENST00000407496 1135 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 SPDYE15P-201ENST00000424157 909 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 TSPY5P-201ENST00000426936 936 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 AC113404.2-201ENST00000507884 177 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 AC024563.2-201ENST00000603282 481 ntBASIC21.11■□□□□ 0.97
CDKL5O76039 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.11■□□□□ 0.97
CDKL5O76039 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDKL5O76039 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.1■□□□□ 0.97
CDKL5O76039 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CDKL5O76039 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.1■□□□□ 0.97
CDKL5O76039 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 DUTP2-201ENST00000519164 463 ntBASIC21.1■□□□□ 0.97
CDKL5O76039 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.1■□□□□ 0.97
CDKL5O76039 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.1■□□□□ 0.97
CDKL5O76039 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.1■□□□□ 0.97
CDKL5O76039 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDKL5O76039 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.1■□□□□ 0.97
CDKL5O76039 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.1■□□□□ 0.97
CDKL5O76039 AP000997.3-201ENST00000623333 2250 ntBASIC21.09■□□□□ 0.97
CDKL5O76039 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
CDKL5O76039 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CDKL5O76039 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 AK4P3-201ENST00000418260 669 ntBASIC21.09■□□□□ 0.97
CDKL5O76039 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CDKL5O76039 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.09■□□□□ 0.97
CDKL5O76039 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.09■□□□□ 0.97
CDKL5O76039 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.09■□□□□ 0.97
CDKL5O76039 AC006011.2-201ENST00000621313 1158 ntBASIC21.09■□□□□ 0.97
CDKL5O76039 AC079602.3-201ENST00000623931 403 ntBASIC21.09■□□□□ 0.97
CDKL5O76039 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.09■□□□□ 0.97
CDKL5O76039 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
CDKL5O76039 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
CDKL5O76039 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDKL5O76039 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms