Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SDC3O75056 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.72■□□□□ 0.43
SDC3O75056 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SDC3O75056 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.72■□□□□ 0.43
SDC3O75056 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.72■□□□□ 0.43
SDC3O75056 AL049840.3-201ENST00000602669 611 ntBASIC17.72■□□□□ 0.43
SDC3O75056 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SDC3O75056 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.72■□□□□ 0.43
SDC3O75056 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SDC3O75056 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SDC3O75056 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC3O75056 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC3O75056 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SDC3O75056 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.71■□□□□ 0.43
SDC3O75056 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 MTCL1P1-201ENST00000446207 792 ntBASIC17.71■□□□□ 0.43
SDC3O75056 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.71■□□□□ 0.43
SDC3O75056 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.71■□□□□ 0.43
SDC3O75056 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.71■□□□□ 0.43
SDC3O75056 LINC01126-201ENST00000623515 1646 ntBASIC17.71■□□□□ 0.43
SDC3O75056 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SDC3O75056 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SDC3O75056 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC3O75056 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC3O75056 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC3O75056 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC3O75056 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SDC3O75056 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC3O75056 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC3O75056 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 AC243591.1-201ENST00000452967 1364 ntBASIC17.7■□□□□ 0.42
SDC3O75056 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.7■□□□□ 0.42
SDC3O75056 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.7■□□□□ 0.42
SDC3O75056 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.7■□□□□ 0.42
SDC3O75056 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.7■□□□□ 0.42
SDC3O75056 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.7■□□□□ 0.42
SDC3O75056 MTDHP3-201ENST00000594186 672 ntBASIC17.7■□□□□ 0.42
SDC3O75056 AP001269.4-201ENST00000609611 512 ntBASIC17.7■□□□□ 0.42
SDC3O75056 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SDC3O75056 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.7■□□□□ 0.42
SDC3O75056 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SDC3O75056 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.69■□□□□ 0.42
SDC3O75056 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
SDC3O75056 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms