Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGN4O00479 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HMGN4O00479 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGN4O00479 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGN4O00479 AC132938.6-201ENST00000623828 1655 ntBASIC16.91■□□□□ 0.3
HMGN4O00479 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.91■□□□□ 0.3
HMGN4O00479 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGN4O00479 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 ECEL1P3-201ENST00000427961 737 ntBASIC16.9■□□□□ 0.3
HMGN4O00479 AC093827.2-201ENST00000512654 315 ntBASIC16.9■□□□□ 0.3
HMGN4O00479 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.9■□□□□ 0.3
HMGN4O00479 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGN4O00479 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGN4O00479 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGN4O00479 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
HMGN4O00479 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGN4O00479 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.9■□□□□ 0.3
HMGN4O00479 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
HMGN4O00479 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGN4O00479 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
HMGN4O00479 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGN4O00479 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 AC092865.7-201ENST00000641832 219 ntBASIC16.89■□□□□ 0.29
HMGN4O00479 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HMGN4O00479 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGN4O00479 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGN4O00479 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGN4O00479 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGN4O00479 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 DUTP2-201ENST00000519164 463 ntBASIC16.88■□□□□ 0.29
HMGN4O00479 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
HMGN4O00479 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGN4O00479 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HMGN4O00479 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 KRT18P22-201ENST00000402024 1347 ntBASIC16.88■□□□□ 0.29
HMGN4O00479 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGN4O00479 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
HMGN4O00479 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGN4O00479 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HMGN4O00479 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGN4O00479 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms