Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.22■□□□□ 0.35
UPK1AO00322 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
UPK1AO00322 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
UPK1AO00322 AC009947.2-201ENST00000444014 672 ntBASIC17.22■□□□□ 0.35
UPK1AO00322 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.22■□□□□ 0.35
UPK1AO00322 AC104390.1-201ENST00000555663 520 ntBASIC17.22■□□□□ 0.35
UPK1AO00322 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.22■□□□□ 0.35
UPK1AO00322 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.22■□□□□ 0.35
UPK1AO00322 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 AC106820.2-201ENST00000563775 3264 ntBASIC17.22■□□□□ 0.35
UPK1AO00322 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
UPK1AO00322 AC124067.4-201ENST00000519691 2379 ntBASIC17.22■□□□□ 0.35
UPK1AO00322 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
UPK1AO00322 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UPK1AO00322 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
UPK1AO00322 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 SDHAP2-201ENST00000455183 2001 ntBASIC17.21■□□□□ 0.35
UPK1AO00322 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.21■□□□□ 0.35
UPK1AO00322 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 AC073912.3-201ENST00000624414 853 ntBASIC17.21■□□□□ 0.35
UPK1AO00322 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
UPK1AO00322 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
UPK1AO00322 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UPK1AO00322 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.21■□□□□ 0.34
UPK1AO00322 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
UPK1AO00322 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
UPK1AO00322 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.2■□□□□ 0.34
UPK1AO00322 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 AC009102.3-201ENST00000623118 1491 ntBASIC17.2■□□□□ 0.34
UPK1AO00322 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
UPK1AO00322 MIR149-201ENST00000384879 89 ntBASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UPK1AO00322 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.2■□□□□ 0.34
UPK1AO00322 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms