Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.55■□□□□ 0.56
CBX4O00257 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CBX4O00257 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CBX4O00257 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.54■□□□□ 0.56
CBX4O00257 LINC00602-201ENST00000629776 2065 ntBASIC18.54■□□□□ 0.56
CBX4O00257 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 AC009113.1-201ENST00000570267 2443 ntBASIC18.54■□□□□ 0.56
CBX4O00257 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CBX4O00257 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.54■□□□□ 0.56
CBX4O00257 CHCHD2P8-201ENST00000429873 447 ntBASIC18.54■□□□□ 0.56
CBX4O00257 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.54■□□□□ 0.56
CBX4O00257 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.54■□□□□ 0.56
CBX4O00257 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.54■□□□□ 0.56
CBX4O00257 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.54■□□□□ 0.56
CBX4O00257 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.54■□□□□ 0.56
CBX4O00257 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CBX4O00257 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CBX4O00257 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CBX4O00257 AL020996.1-203ENST00000536896 2307 ntBASIC18.54■□□□□ 0.56
CBX4O00257 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CBX4O00257 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CBX4O00257 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.53■□□□□ 0.56
CBX4O00257 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.53■□□□□ 0.56
CBX4O00257 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.53■□□□□ 0.56
CBX4O00257 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CBX4O00257 AC092119.3-201ENST00000612618 583 ntBASIC18.53■□□□□ 0.56
CBX4O00257 IGHV3-41-201ENST00000613121 348 ntBASIC18.53■□□□□ 0.56
CBX4O00257 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CBX4O00257 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CBX4O00257 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CBX4O00257 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.53■□□□□ 0.56
CBX4O00257 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.52■□□□□ 0.56
CBX4O00257 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.52■□□□□ 0.56
CBX4O00257 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CBX4O00257 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CBX4O00257 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.52■□□□□ 0.56
CBX4O00257 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.52■□□□□ 0.56
CBX4O00257 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CBX4O00257 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.52■□□□□ 0.56
CBX4O00257 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.52■□□□□ 0.56
CBX4O00257 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.52■□□□□ 0.56
CBX4O00257 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.52■□□□□ 0.56
CBX4O00257 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CBX4O00257 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.52■□□□□ 0.56
CBX4O00257 PHGDH-209ENST00000641074 1780 ntBASIC18.52■□□□□ 0.55
CBX4O00257 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CBX4O00257 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.55
CBX4O00257 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CBX4O00257 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.52■□□□□ 0.55
CBX4O00257 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CBX4O00257 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.52■□□□□ 0.55
CBX4O00257 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CBX4O00257 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms