Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PHGDH-209ENST00000641074 1780 ntBASIC14.73□□□□□ -0.05
FOXA2Q9Y261 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 AC097493.4-201ENST00000641197 219 ntBASIC14.73□□□□□ -0.05
FOXA2Q9Y261 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA2Q9Y261 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 AC009102.3-201ENST00000623118 1491 ntBASIC14.72□□□□□ -0.05
FOXA2Q9Y261 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 MIR149-201ENST00000384879 89 ntBASIC14.72□□□□□ -0.05
FOXA2Q9Y261 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 FAM87A-204ENST00000613235 858 ntBASIC14.72□□□□□ -0.05
FOXA2Q9Y261 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA2Q9Y261 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 AL163051.1-201ENST00000569214 1512 ntBASIC14.71□□□□□ -0.05
FOXA2Q9Y261 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 INGX-201ENST00000359239 846 ntBASIC14.71□□□□□ -0.05
FOXA2Q9Y261 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 LIN28AP1-201ENST00000429574 405 ntBASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms