Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.05□□□□□ -0.16
NOTCH3Q9UM47 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AC090616.6-201ENST00000582640 721 ntBASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AC010240.3-201ENST00000607688 395 ntBASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 KRT8P7-201ENST00000533003 1432 ntBASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.04□□□□□ -0.16
NOTCH3Q9UM47 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 MIR574-201ENST00000385209 96 ntBASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 AC034236.2-201ENST00000606662 1610 ntBASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 POLD2P1-201ENST00000511220 997 ntBASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NOTCH3Q9UM47 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms