Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 GPR32P1-201ENST00000601788 811 ntBASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM39Q9HCM9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 NEFHP1-201ENST00000412845 2629 ntBASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
TRIM39Q9HCM9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 TSPY22P-201ENST00000427496 604 ntBASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 BX276092.5-203ENST00000456199 560 ntBASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 KRT8P26-201ENST00000534154 1276 ntBASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 AL121672.3-201ENST00000608644 468 ntBASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 Z83836.1-201ENST00000624605 1642 ntBASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM39Q9HCM9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 AL390719.2-201ENST00000606993 987 ntBASIC18■□□□□ 0.47
TRIM39Q9HCM9 AC069148.1-201ENST00000608741 768 ntBASIC18■□□□□ 0.47
TRIM39Q9HCM9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRIM39Q9HCM9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM39Q9HCM9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM39Q9HCM9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms