Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 LAGE3P1-201ENST00000425356 484 ntBASIC19.62■□□□□ 0.73
LRCH3Q96II8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.62■□□□□ 0.73
LRCH3Q96II8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRCH3Q96II8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 AL031432.2-201ENST00000566714 459 ntBASIC19.61■□□□□ 0.73
LRCH3Q96II8 AL928711.1-201ENST00000570165 459 ntBASIC19.61■□□□□ 0.73
LRCH3Q96II8 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LRCH3Q96II8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.61■□□□□ 0.73
LRCH3Q96II8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 GAPDHP21-201ENST00000450301 1010 ntBASIC19.6■□□□□ 0.73
LRCH3Q96II8 SIGLEC30P-201ENST00000455569 941 ntBASIC19.6■□□□□ 0.73
LRCH3Q96II8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC018845.2-201ENST00000568326 409 ntBASIC19.6■□□□□ 0.73
LRCH3Q96II8 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC011467.2-201ENST00000598425 242 ntBASIC19.6■□□□□ 0.73
LRCH3Q96II8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LRCH3Q96II8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.6■□□□□ 0.73
LRCH3Q96II8 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.59■□□□□ 0.73
LRCH3Q96II8 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.59■□□□□ 0.73
LRCH3Q96II8 AC005593.1-201ENST00000624894 515 ntBASIC19.59■□□□□ 0.73
LRCH3Q96II8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LRCH3Q96II8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms