Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
TTC28Q96AY4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 KRT18P41-201ENST00000518924 1277 ntBASIC18.32■□□□□ 0.52
TTC28Q96AY4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TTC28Q96AY4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.32■□□□□ 0.52
TTC28Q96AY4 KRT8P47-201ENST00000604727 1398 ntBASIC18.31■□□□□ 0.52
TTC28Q96AY4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 AC017083.2-201ENST00000608069 979 ntBASIC18.31■□□□□ 0.52
TTC28Q96AY4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 AL163051.1-201ENST00000569214 1512 ntBASIC18.31■□□□□ 0.52
TTC28Q96AY4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TTC28Q96AY4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.31■□□□□ 0.52
TTC28Q96AY4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 AC068587.10-201ENST00000641210 219 ntBASIC18.3■□□□□ 0.52
TTC28Q96AY4 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TTC28Q96AY4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.3■□□□□ 0.52
TTC28Q96AY4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 AC074386.1-202ENST00000463561 864 ntBASIC18.29■□□□□ 0.52
TTC28Q96AY4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TTC28Q96AY4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.29■□□□□ 0.52
TTC28Q96AY4 AL162274.1-201ENST00000617191 1098 ntBASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms