Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ZNF540Q8NDQ6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AC068587.9-201ENST00000641814 219 ntBASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 AC141586.5-201ENST00000624546 2050 ntBASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ZNF540Q8NDQ6 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 MIR4785-201ENST00000585005 73 ntBASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ZNF540Q8NDQ6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 AL049637.2-201ENST00000641778 930 ntBASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms