Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01126-201ENST00000623515 1646 ntBASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDDC3Q8N4P3 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 AL671883.3-201ENST00000603274 991 ntBASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HDDC3Q8N4P3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HDDC3Q8N4P3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.5
HDDC3Q8N4P3 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HDDC3Q8N4P3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HDDC3Q8N4P3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 LINC00602-201ENST00000629776 2065 ntBASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 AC068472.1-201ENST00000474589 881 ntBASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HDDC3Q8N4P3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 MIR574-201ENST00000385209 96 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 POM121L3P-201ENST00000419331 1163 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 AC093909.1-201ENST00000504731 1122 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 AL773604.1-201ENST00000617417 272 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 REXO1L6P-202ENST00000619970 1078 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 IL9RP2-201ENST00000423948 1312 ntBASIC18.19■□□□□ 0.5
HDDC3Q8N4P3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms